Cédric LIPPENS (PhD)
Business Analyst , Evolutionary Biologist (PhD) and Analyst Developer
Contact: lippens.cedric@protonmail.com
Business Analyst , Evolutionary Biologist (PhD) and Analyst Developer
Contact: lippens.cedric@protonmail.com
2018.04 : Java EE (OpenClassRoom MOOC)
Project: Subtitle file editor/translator (.srt) : .str import/edit/export in DB
MVC, DAO, Tomcat9, MySQL server, Eclipse
2014-2016 : Doctoral School trainings
Project Management - Doctoral School training (12h) + MOOC of Ecole Centrale Lille (free class over 6 weeks)
Communication - Leadership and Team Management + Interpersonal Communication - Doctoral School training (6h + 18h)
2008-2016 : PhD in Evolutionary Biology
Title: Costs and benefits of inflammation in host-parasite relationships - Thesis PDF
University of Lille 1 (BOP Bachelor), Montpellier 2 (BEE Master degree) and of Bourgogne (PhD)
## Report of defense available on demand ## 2007-2008 : First year of medicine
University of Lille 2 2005-2007 : Analyst Developer
Degree in informatics ("DUT": Universitary Degree of technology - 2 years)
IUT-A of Villeneuve d'Ascq at the University of Lille 1
Juin 2018 : TCO Business Analyst at T&S for Faurecia Technology&Strategy [Schiltigheim, France] Faurecia GIS [Seloncourt, France] Automotive Industry __________ Business Analyst for Traceability and COnformity (TCO) Consulting, Functional/Technical analysis, Support for implementation, Tests, Reporting Documentations/Tutorials Maker and Key Users Trainer Multicultural and Multi-metier Interactions __________ PROCS (TCO software - gIMM solution - T-Systems), Kepware (OPC Client), GP-Pro EX (Proface.com) Visio, Word, Excel, NotePad++ (regular expressions) VBA programing (Excel)
2017-2018 : Bioinformatician at CHUL de Québec (5 months) Université Laval – CHUL – Centre de génomique / ADLab [Québec, Canada] __________ Application management and development of the metagene R package on Bioconductor 3.6 (update of ChIP-seq and development of RNA-seq functions) Bash and python programming Handling massive data
2017 : Bioinformatician (Volonteer - 1 month) Université de Franche-Comté (UFC) - UFR-ST département DISC - Home working - [Montbéliard, France] __________ Update of a pipeline of data processing in Python
2013-2016 : PhD in Evolutionary Biology Université de Bourgogne (uB) - BioGéoSciences Laboratory (UMR CNRS/uB 6282) - [Dijon, France] Title: Costs and benefits of inflammation in host-parasite relationships __________ Project management (4 persons) : planning and management of material and human resources Technicians management (2 persons) : training for laboratories methods and protocols & supervision of experiments Statistical Analysis, R programing and Articles redaction Text Mining : Creating parser to extract data from log files (regular expressions and python programing) __________ Statistics lecturer of bachelor students 192h (lectures and practical work on table and on computer) Trainees management : thematical and technical management and report surpervision Popular Science : involvement in school student meeting about my pratice and the reseach
2013 : Master 2 internship (5 months) CBGP Laboratory - IRD - [Montpellier, France] Article: Genetic structure and invasion history of the house mouse in Senegal, West Africa: a legacy of colonial and contemporary times __________ Clustering, Coalescence and Phylogenetics studies via various genetics population softwares and tools: GENEPOP, STRUCTURE, DIYABC, MrBayes, MAFFT and FaBox DNA extraction and amplification Work on computing center
2012 : Master 1 internship (3 months) MIVEGEC Laboratory - IRD - [Montpellier, France] Topic: Genetic resistances to malaria for great apes __________ DNA extraction, nested PCR, sequences alignment
2011 : Tutor of two students (2h per week) University of Lille 1 __________ Guide and support students about university life Explain lectures and biological concepts in additional of pratical work support
2008-2011 : Four voluntary internships (2-6 weeks) PRISM and EEP Laboratories and Zoo of Lille - [Lille, France] __________ C++ modules programming for studying sporophytic self-incompatibility Path Analysis on factors that influence grain production for Arabidopsis thaliana Initiation to RT-PCR : The rôle of NFkB transcription factor in the immune system of Hirudo medicinalis Animal keeper and responsible for the identification of turtles seized by customs
2008 : Relationship Marketing - Franchise (6 months) ACN - [Lille, France] __________ Creation of customers portfolio Looking for new collaborators
2007 : Intership in informatics (3 months) GFI informatique Center of Banking Services (CSB) - [Lille, France] __________ Application Management Modules and flow diagrams updates COBOL programming
Informatics skills
: I'm a begginer //
: I'm autonomous // 
: I master and I can teach
*Sololearn or UML OpenclassRoom certifications goal: refresh old knowledge
Algorithmic
Analyst-Developer degree
Java EE
OpenClassRoom MOOC - certification
Python3
Data analysis (panda, scypi, numpy, seaborn, matplotlib, scikit-learn)
IBM Data Analysis MOOC ongoing (March 2021)
Programming: Sololearn certification
Jupyter
Main python IDE I use for data analysis
HTML
Analyst-Developer degree
Sololearn certification
SQL
Analyst-Developer degree
Sololearn certification
VBA (excel)
Use monthly to automatize some tasks
Statistics with R
Linear, generalized, mixed models, data mining and clustering (lm, glm, lmer/lme4, glmm, FactoMineR, ggplot2 package)
R-Studio (IDE)
Regular Expression
Used with NotePad++
Bash (Shell programing)
For my own use
UML
Analyst-Developer degree
OpenClassRoom certification
PROCS (TCO software - gIMM solution T-systems)
Currently used
Kepware (OPC Client)
Currently used
Microsoft Office
At easy with Word, Excel, Power Point and Visio
Windows
Professional OS
Linux (Ubuntu)
Personal OS (former professional OS)
Managerial and pedagogical skills Multicultural and multi-metiers communication - Experience as Business analyst and PhD Student Supervision of trainees and technicians during my PhD Popular Science - Expérimentarium (Université de Bourgogne – 20h) Bachelor Lecturer in Statistics - Contractual PhD Student - 192h over three years Tutor of two students during the third year of my university degree (2h per week - 2011)
Bioinformatics and Population Genetics Skills I already worked with: Metagene, Samtools, STAR, Bowtie, Cufflinks, Kallisto, RSEM, RNAseQC... STRUCTURE, DIYABC, MyBayes, GENPOP, Seaview... R-studio, Octave/Matlab
Laboratory skills Extraction: Trizol, Qiagen kit or magnetic beads kit (Ambion) RT-PCR, PCR and Q-PCR ELISA and cytokines multiplex assay (Luminex technology) Maintenance of Heligmosomoïdes polygyrus and Plasmodium yoelii
______________
I am curious, synthetic and very friendly. I am truely motivated by challenges and looking for constant optimisation, resulting in task automatisation as frequently as I can. I am also a good pedagogue, a compulsive helper, thinking that if a person does not understand is because I must explain another way. "Enthusiastic, creative and sociable free spirits, who can always find a reason to smile"
French Native Language
English Fluent (Level B2 of the CECRL)
Spanish Novice-Intermediate (Level A2-B1 of the CECRL)
Scientific communications: 9 published articles and 1 published chapter Dalecky, A., K. Ba, S. Piry, C. Lippens, C. A. Diagne, M. Kane, A. Sow, M. Diallo, Y. Niang, A. Konecny, N. Sarr, E. Artige, N. Charbonnel, L. Granjon, J. M. Duplantier and C. Brouat. 2015. Range expansion of the invasive house mouse Mus musculus domesticus in Senegal, West Africa: a synthesis of trapping data over three decades, 1983- 014. Mammal Review 45(3): 176-190. ______________ Lippens, C., E. Guivier, B. Faivre and G. Sorci. 2016. Reaction norms of host immunity, host fitness and parasite performance in a mouse - intestinal nematode interaction. International Journal for Parasitology 46(2): 133-140. ______________ Sorci, G., E. Guivier, C. Lippens, B. Faivre. 2016. Microbes, parasites and immune diseases. In: Evolutionary Thinking in Medicine. From Research to Policy and Practice (Eds, A. Alvergne, C. Jenkinson, C. Faurie), pp. 211-223, Springer. ______________ Lippens, C., A. Estoup, M.K. Hima, A. Loiseau, C. Tatard, A. Dalecky, K. Bâ, M. Kane, M. Diallo, A. Sow, Y. Niang, S.Piry, K. Berthier, R. Leblois, J.M. Duplantier, C. Brouat. 2017. Genetic structure and invasion history of the house mouse (Mus musculus domesticus) in Senegal, West Africa: a legacy of colonial and contemporary times. Heredity 119 :64-75. ______________ Lippens, C., B. Faivre, C. Lechenault, G. Sorci. 2017. Aging parasites produce offspring with poor fitness prospects. Biology Letters 13(2). ______________ Lippens, C., B. Faivre, A. Ollivier, G. Sorci. 2017. Micro-evolutionary response of a gut nematode to intestinal inflammation. Int J Parasitol 47(10-11):617-623. ______________ Lippens, C., E. Guivier, A. Ollivier, B. Faivre, G. Sorci. 2017. Life-history adjustments to intestinal inflammation in a gut nematode. Journal of Experimental Biology 220: 3724-3732. ______________ Guivier, E., C. Lippens, B. Faivre, G. Sorci. Plastic and micro-evolutionary responses of a nematode to the host immune environment.Experimental Parasitology 181:14-22. ______________ Sorci, G., C. Lippens, C. Lechenault, B. Faivre. 2017. Benefits of immune protection versus immunopathology costs: a synthesis from cytokine KO models. Infection, Genetics and Evolution 54:491-495. ______________ Lippens, C., E. Guivier, S. Reece, A. O’Donnell, S. Cornet, B. Faivre, G. Sorci. 2019. Does early infection accelerate aging: an experimental test with Plasmodium infected mice. Evolutionary Applications. 12:314–323 Scientific communications: 5 conferences including 3 internationals Printemps de Baillarguet - june 2013 - CBGP Laboratory: Oral on article “Genetic structure and invasion history of the house mouse (Mus musculus domesticus) in Senegal, West Africa: a legacy of colonial and contemporary times” (local conference) ______________ Jacques Monod Conference - 2-6 nov 2013 - Station Biologique de Roscoff: Poster on article “Genetic structure and invasion history of the house mouse (Mus musculus domesticus) in Senegal, West Africa: a legacy of colonial and contemporary times” ______________ Jacques Monod Conference - 6-10 sept 2014 - Station Biologique de Roscoff: Poster on article “Reaction norms of host immunity, host fitness and parasite performance in a mouse - intestinal nematode interaction” ______________ Forum des jeunes chercheurs - 18-19 june 2015 – Université de Bourgogne: Oral on article “Reaction norms of host immunity, host fitness and parasite performance in a mouse - intestinal nematode interaction” (local conference) ______________ Evolutionary Medicine Conference - 31-2 august 2015 - University of Zurich: Poster on article “Reaction norms of host immunity, host fitness and parasite performance in a mouse - intestinal nematode interaction”